IL_9FQZ_140

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

(OMG)UGC*GGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_140 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.1525

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9FQZ|1|L5|OMG|4637
9FQZ|1|L5|U|4638
9FQZ|1|L5|G|4639
9FQZ|1|L5|C|4640
*
9FQZ|1|L5|G|4659
9FQZ|1|L5|G|4660
9FQZ|1|L5|G|4661
9FQZ|1|L5|C|4662

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31