IL_9FQZ_141

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9FQZ|1|L5|A|4656, 9FQZ|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_141 not in the Motif Atlas

Homologous match to IL_8GLP_163

Geometric discrepancy: 0.0435

The information below is about IL_8GLP_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9FQZ|1|L5|U|4641
9FQZ|1|L5|U|4642
*
9FQZ|1|L5|A|4655
9FQZ|1|L5|A|4656
9FQZ|1|L5|U|4657
9FQZ|1|L5|G|4658

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31