IL_9FQZ_194

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9FQZ|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_194 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.4393

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9FQZ|1|S2|G|606
9FQZ|1|S2|U|607
9FQZ|1|S2|C|608
*
9FQZ|1|S2|G|635
9FQZ|1|S2|C|636

Current chains

Chain S2

SSU rRNA

Nearby chains

Chain CD

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain SD

40S ribosomal protein S3

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein