IL_9FQZ_232
3D structure
- PDB id
- 9FQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- (4AC)G*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 9FQZ|1|S2|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FQZ_232 not in the Motif Atlas
- Homologous match to IL_9H3G_222
- Geometric discrepancy: 0.077
- The information below is about IL_9H3G_222
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 188
Unit IDs
9FQZ|1|S2|4AC|1337
9FQZ|1|S2|G|1338
*
9FQZ|1|S2|C|1488
9FQZ|1|S2|A|1489
9FQZ|1|S2|OMG|1490
Current chains
- Chain S2
- SSU rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain CD
- Isoform 2 of SERPINE1 mRNA-binding protein 1
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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