IL_9FRA_006

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GAUAAUC

Length

13 nucleotides

Bulged bases

9FRA|1|2|U|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|G|129
9FRA|1|2|A|130
9FRA|1|2|U|131
9FRA|1|2|A|132
9FRA|1|2|A|133
9FRA|1|2|C|134
*
9FRA|1|2|G|149
9FRA|1|2|A|150
9FRA|1|2|U|151
9FRA|1|2|A|152
9FRA|1|2|A|153
9FRA|1|2|U|154
9FRA|1|2|C|155

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6