IL_9FRA_024

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAGAG*UAGAAC

Length

13 nucleotides

Bulged bases

9FRA|1|2|A|624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|G|619
9FRA|1|2|G|620
9FRA|1|2|G|621
9FRA|1|2|A|622
9FRA|1|2|G|623
9FRA|1|2|A|624
9FRA|1|2|G|625
*
9FRA|1|2|U|699
9FRA|1|2|A|700
9FRA|1|2|G|701
9FRA|1|2|A|702
9FRA|1|2|A|703
9FRA|1|2|C|704

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A

Small ribosomal subunit protein eS1

Chain Q

Small ribosomal subunit protein uS15

Chain W

Small ribosomal subunit protein eS27