3D structure

PDB id
9FRA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
ACCA*(OMU)CCCU
Length
9 nucleotides
Bulged bases
9FRA|1|2|C|897, 9FRA|1|2|C|898
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRA|1|2|A|896
9FRA|1|2|C|897
9FRA|1|2|C|898
9FRA|1|2|A|899
*
9FRA|1|2|OMU|1344
9FRA|1|2|C|1345
9FRA|1|2|C|1346
9FRA|1|2|C|1347
9FRA|1|2|U|1348

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain H
Small ribosomal subunit protein uS7
Chain K
Small ribosomal subunit protein uS9
Chain L
Small ribosomal subunit protein uS10
Chain X
Small ribosomal subunit protein eS28

Coloring options:

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