IL_9FRA_035

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUGACG*CUGAC

Length

13 nucleotides

Bulged bases

9FRA|1|2|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|G|963
9FRA|1|2|G|964
9FRA|1|2|A|965
9FRA|1|2|U|966
9FRA|1|2|G|967
9FRA|1|2|A|968
9FRA|1|2|C|969
9FRA|1|2|G|970
*
9FRA|1|2|C|990
9FRA|1|2|U|991
9FRA|1|2|G|992
9FRA|1|2|A|993
9FRA|1|2|C|994

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 3

Large ribosomal subunit protein eL8

Chain P

Small ribosomal subunit protein uS14

Chain Y

Small ribosomal subunit protein eS31

Chain a

aS34