IL_9FRA_043

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGC*GAGGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|C|1122
9FRA|1|2|U|1123
9FRA|1|2|G|1124
9FRA|1|2|C|1125
*
9FRA|1|2|G|1138
9FRA|1|2|A|1139
9FRA|1|2|G|1140
9FRA|1|2|G|1141
9FRA|1|2|A|1142
9FRA|1|2|G|1143
9FRA|1|2|G|1144

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein eS17

Chain X

Small ribosomal subunit protein eS28

Chain d

VapB-type antitoxin