IL_9FRK_008

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUCAG*CUAUAACG

Length

14 nucleotides

Bulged bases

9FRK|1|2|U|249, 9FRK|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|247
9FRK|1|2|A|248
9FRK|1|2|U|249
9FRK|1|2|C|250
9FRK|1|2|A|251
9FRK|1|2|G|252
*
9FRK|1|2|C|282
9FRK|1|2|U|283
9FRK|1|2|A|284
9FRK|1|2|U|285
9FRK|1|2|A|286
9FRK|1|2|A|287
9FRK|1|2|C|288
9FRK|1|2|G|289

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain J

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS12

Chain R

Small ribosomal subunit protein uS17