IL_9FRK_016

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUCAG*CGGUAAU(A2M)C

Length

16 nucleotides

Bulged bases

9FRK|1|2|U|490, 9FRK|1|2|A|491, 9FRK|1|2|U|493, 9FRK|1|2|A2M|494

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|G|474
9FRK|1|2|U|475
9FRK|1|2|G|476
9FRK|1|2|U|477
9FRK|1|2|C|478
9FRK|1|2|A|479
9FRK|1|2|G|480
*
9FRK|1|2|C|487
9FRK|1|2|G|488
9FRK|1|2|G|489
9FRK|1|2|U|490
9FRK|1|2|A|491
9FRK|1|2|A|492
9FRK|1|2|U|493
9FRK|1|2|A2M|494
9FRK|1|2|C|495

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA aEF1A

Chain N

Small ribosomal subunit protein uS12

Chain Z

Small ribosomal subunit protein uS3

Chain e

LSU ribosomal protein S30E (Rps30E)