IL_9FRK_035

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUGACG*CUGAC

Length

13 nucleotides

Bulged bases

9FRK|1|2|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|G|963
9FRK|1|2|G|964
9FRK|1|2|A|965
9FRK|1|2|U|966
9FRK|1|2|G|967
9FRK|1|2|A|968
9FRK|1|2|C|969
9FRK|1|2|G|970
*
9FRK|1|2|C|990
9FRK|1|2|U|991
9FRK|1|2|G|992
9FRK|1|2|A|993
9FRK|1|2|C|994

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 3

Large ribosomal subunit protein eL8

Chain P

Small ribosomal subunit protein uS14

Chain Y

Small ribosomal subunit protein eS31

Chain a

aS34