IL_9FRL_008

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAUCAG*CUAUAACG

Length

14 nucleotides

Bulged bases

9FRL|1|2|U|249, 9FRL|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|247
9FRL|1|2|A|248
9FRL|1|2|U|249
9FRL|1|2|C|250
9FRL|1|2|A|251
9FRL|1|2|G|252
*
9FRL|1|2|C|282
9FRL|1|2|U|283
9FRL|1|2|A|284
9FRL|1|2|U|285
9FRL|1|2|A|286
9FRL|1|2|A|287
9FRL|1|2|C|288
9FRL|1|2|G|289

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain J

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS12

Chain R

Small ribosomal subunit protein uS17