IL_9FRL_016

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GUGUCAG*CGGUAAU(A2M)C

Length

16 nucleotides

Bulged bases

9FRL|1|2|U|490, 9FRL|1|2|A|491, 9FRL|1|2|U|493, 9FRL|1|2|A2M|494

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|G|474
9FRL|1|2|U|475
9FRL|1|2|G|476
9FRL|1|2|U|477
9FRL|1|2|C|478
9FRL|1|2|A|479
9FRL|1|2|G|480
*
9FRL|1|2|C|487
9FRL|1|2|G|488
9FRL|1|2|G|489
9FRL|1|2|U|490
9FRL|1|2|A|491
9FRL|1|2|A|492
9FRL|1|2|U|493
9FRL|1|2|A2M|494
9FRL|1|2|C|495

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA

Chain N

Small ribosomal subunit protein uS12

Chain Z

Small ribosomal subunit protein uS3

Chain e

LSU ribosomal protein S30E (Rps30E)