IL_9FRL_032

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

ACCA*(OMU)CCCU

Length

9 nucleotides

Bulged bases

9FRL|1|2|C|897, 9FRL|1|2|C|898

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|A|896
9FRL|1|2|C|897
9FRL|1|2|C|898
9FRL|1|2|A|899
*
9FRL|1|2|OMU|1344
9FRL|1|2|C|1345
9FRL|1|2|C|1346
9FRL|1|2|C|1347
9FRL|1|2|U|1348

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain L

Small ribosomal subunit protein uS10

Chain X

Small ribosomal subunit protein eS28