IL_9FRL_035

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGAUGACG*CUGAC

Length

13 nucleotides

Bulged bases

9FRL|1|2|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|G|963
9FRL|1|2|G|964
9FRL|1|2|A|965
9FRL|1|2|U|966
9FRL|1|2|G|967
9FRL|1|2|A|968
9FRL|1|2|C|969
9FRL|1|2|G|970
*
9FRL|1|2|C|990
9FRL|1|2|U|991
9FRL|1|2|G|992
9FRL|1|2|A|993
9FRL|1|2|C|994

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 3

Large ribosomal subunit protein eL8

Chain P

Small ribosomal subunit protein uS14

Chain Y

Small ribosomal subunit protein eS31

Chain a

aS34