IL_9FRL_040

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

C(OMG)*CAG

Length

5 nucleotides

Bulged bases

9FRL|1|2|A|1159

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|1017
9FRL|1|2|OMG|1018
*
9FRL|1|2|C|1158
9FRL|1|2|A|1159
9FRL|1|2|G|1160

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA

Chain F

Small ribosomal subunit protein uS5

Chain K

Small ribosomal subunit protein uS9

Chain L

Small ribosomal subunit protein uS10

Chain P

Small ribosomal subunit protein uS14

Chain Z

Small ribosomal subunit protein uS3

Chain a

aS34