IL_9FRL_043

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUGC*GAGGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|1122
9FRL|1|2|U|1123
9FRL|1|2|G|1124
9FRL|1|2|C|1125
*
9FRL|1|2|G|1138
9FRL|1|2|A|1139
9FRL|1|2|G|1140
9FRL|1|2|G|1141
9FRL|1|2|A|1142
9FRL|1|2|G|1143
9FRL|1|2|G|1144

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein eS17

Chain X

Small ribosomal subunit protein eS28

Chain d

aS33