IL_9FS6_006

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAAC*GAUAAUC

Length

13 nucleotides

Bulged bases

9FS6|1|2|U|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|G|129
9FS6|1|2|A|130
9FS6|1|2|U|131
9FS6|1|2|A|132
9FS6|1|2|A|133
9FS6|1|2|C|134
*
9FS6|1|2|G|149
9FS6|1|2|A|150
9FS6|1|2|U|151
9FS6|1|2|A|152
9FS6|1|2|A|153
9FS6|1|2|U|154
9FS6|1|2|C|155

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6