IL_9FS6_026

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAG*CUCAGAUCU

Length

15 nucleotides

Bulged bases

9FS6|1|2|A|661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|G|642
9FS6|1|2|A|643
9FS6|1|2|G|644
9FS6|1|2|U|645
9FS6|1|2|A|646
9FS6|1|2|G|647
*
9FS6|1|2|C|658
9FS6|1|2|U|659
9FS6|1|2|C|660
9FS6|1|2|A|661
9FS6|1|2|G|662
9FS6|1|2|A|663
9FS6|1|2|U|664
9FS6|1|2|C|665
9FS6|1|2|U|666

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A

Small ribosomal subunit protein eS1

Chain M

Small ribosomal subunit protein uS11