IL_9FS6_035

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUGACG*CUGAC

Length

13 nucleotides

Bulged bases

9FS6|1|2|U|966

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|G|963
9FS6|1|2|G|964
9FS6|1|2|A|965
9FS6|1|2|U|966
9FS6|1|2|G|967
9FS6|1|2|A|968
9FS6|1|2|C|969
9FS6|1|2|G|970
*
9FS6|1|2|C|990
9FS6|1|2|U|991
9FS6|1|2|G|992
9FS6|1|2|A|993
9FS6|1|2|C|994

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 3

Large ribosomal subunit protein eL8

Chain P

Small ribosomal subunit protein uS14

Chain Y

Small ribosomal subunit protein eS31

Chain a

aS34