IL_9FS8_016

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGUCAG*CGGUAAU(A2M)C

Length

16 nucleotides

Bulged bases

9FS8|1|2|U|490, 9FS8|1|2|A|491, 9FS8|1|2|U|493, 9FS8|1|2|A2M|494

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|G|474
9FS8|1|2|U|475
9FS8|1|2|G|476
9FS8|1|2|U|477
9FS8|1|2|C|478
9FS8|1|2|A|479
9FS8|1|2|G|480
*
9FS8|1|2|C|487
9FS8|1|2|G|488
9FS8|1|2|G|489
9FS8|1|2|U|490
9FS8|1|2|A|491
9FS8|1|2|A|492
9FS8|1|2|U|493
9FS8|1|2|A2M|494
9FS8|1|2|C|495

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA Ss-aEF1A-like

Chain N

Small ribosomal subunit protein uS12

Chain Z

Small ribosomal subunit protein uS3

Chain e

LSU ribosomal protein S30E (Rps30E)