IL_9FSF_006

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GAUAAUC

Length

13 nucleotides

Bulged bases

9FSF|1|2|U|154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|G|129
9FSF|1|2|A|130
9FSF|1|2|U|131
9FSF|1|2|A|132
9FSF|1|2|A|133
9FSF|1|2|C|134
*
9FSF|1|2|G|149
9FSF|1|2|A|150
9FSF|1|2|U|151
9FSF|1|2|A|152
9FSF|1|2|A|153
9FSF|1|2|U|154
9FSF|1|2|C|155

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain G

Small ribosomal subunit protein eS6