IL_9FSF_008

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUCAG*CUAUAACG

Length

14 nucleotides

Bulged bases

9FSF|1|2|U|249, 9FSF|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|C|247
9FSF|1|2|A|248
9FSF|1|2|U|249
9FSF|1|2|C|250
9FSF|1|2|A|251
9FSF|1|2|G|252
*
9FSF|1|2|C|282
9FSF|1|2|U|283
9FSF|1|2|A|284
9FSF|1|2|U|285
9FSF|1|2|A|286
9FSF|1|2|A|287
9FSF|1|2|C|288
9FSF|1|2|G|289

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain J

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS12

Chain R

Small ribosomal subunit protein uS17