IL_9FSF_016

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGUCAG*CGGUAAU(A2M)C

Length

16 nucleotides

Bulged bases

9FSF|1|2|A|491, 9FSF|1|2|U|493, 9FSF|1|2|A2M|494

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|G|474
9FSF|1|2|U|475
9FSF|1|2|G|476
9FSF|1|2|U|477
9FSF|1|2|C|478
9FSF|1|2|A|479
9FSF|1|2|G|480
*
9FSF|1|2|C|487
9FSF|1|2|G|488
9FSF|1|2|G|489
9FSF|1|2|U|490
9FSF|1|2|A|491
9FSF|1|2|A|492
9FSF|1|2|U|493
9FSF|1|2|A2M|494
9FSF|1|2|C|495

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA Map

Chain N

Small ribosomal subunit protein uS12

Chain Z

Small ribosomal subunit protein uS3

Chain e

LSU ribosomal protein S30E (Rps30E)