IL_9FY0_024

3D structure

PDB id

9FY0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAGAG*UAGAAC

Length

13 nucleotides

Bulged bases

9FY0|1|2|A|624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FY0|1|2|G|619
9FY0|1|2|G|620
9FY0|1|2|G|621
9FY0|1|2|A|622
9FY0|1|2|G|623
9FY0|1|2|A|624
9FY0|1|2|G|625
*
9FY0|1|2|U|699
9FY0|1|2|A|700
9FY0|1|2|G|701
9FY0|1|2|A|702
9FY0|1|2|A|703
9FY0|1|2|C|704

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A

Small ribosomal subunit protein eS1

Chain Q

Small ribosomal subunit protein uS15

Chain W

Small ribosomal subunit protein eS27

Chain b

LSU ribosomal protein S26E (Rps26E)