IL_9FY0_026

3D structure

PDB id

9FY0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAG*CUCAGAUCU

Length

15 nucleotides

Bulged bases

9FY0|1|2|A|661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FY0|1|2|G|642
9FY0|1|2|A|643
9FY0|1|2|G|644
9FY0|1|2|U|645
9FY0|1|2|A|646
9FY0|1|2|G|647
*
9FY0|1|2|C|658
9FY0|1|2|U|659
9FY0|1|2|C|660
9FY0|1|2|A|661
9FY0|1|2|G|662
9FY0|1|2|A|663
9FY0|1|2|U|664
9FY0|1|2|C|665
9FY0|1|2|U|666

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A

Small ribosomal subunit protein eS1

Chain M

Small ribosomal subunit protein uS11