IL_9G1Z_039
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G1Z_039 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0698
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|1|G|987
9G1Z|1|1|A|988
9G1Z|1|1|G|989
9G1Z|1|1|G|990
9G1Z|1|1|U|991
9G1Z|1|1|A|992
9G1Z|1|1|A|993
*
9G1Z|1|1|U|1048
9G1Z|1|1|A|1049
9G1Z|1|1|A|1050
9G1Z|1|1|A|1051
9G1Z|1|1|U|1052
9G1Z|1|1|A|1053
9G1Z|1|1|U|1054
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain o
- Ribosomal 60S subunit protein L7A
- Chain r
- Ribosomal 60S subunit protein L10
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