IL_9G1Z_040

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_040 not in the Motif Atlas

Homologous match to IL_8CRE_042

Geometric discrepancy: 0.0785

The information below is about IL_8CRE_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9G1Z|1|1|A|993
9G1Z|1|1|A|994
*
9G1Z|1|1|U|1046
9G1Z|1|1|U|1047
9G1Z|1|1|U|1048

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain m

Ribosomal 60S subunit protein L5

Chain r

Ribosomal 60S subunit protein L10