IL_9G1Z_044

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|1012, 9G1Z|1|1|U|1013

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_044 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2609

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9G1Z|1|1|U|1010
9G1Z|1|1|C|1011
9G1Z|1|1|U|1012
9G1Z|1|1|U|1013
9G1Z|1|1|G|1014
*
9G1Z|1|1|U|1030
9G1Z|1|1|A|1031
9G1Z|1|1|A|1032

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Ribosomal 60S subunit protein L5

Chain r

Ribosomal 60S subunit protein L10