IL_9G1Z_053

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9G1Z|1|1|U|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_053 not in the Motif Atlas

Homologous match to IL_8CRE_056

Geometric discrepancy: 0.104

The information below is about IL_8CRE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9G1Z|1|1|G|1203
9G1Z|1|1|U|1204
9G1Z|1|1|G|1205
*
9G1Z|1|1|C|1292
9G1Z|1|1|C|1293

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 0

60S ribosomal protein L20

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B