IL_9G1Z_067

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

9G1Z|1|1|U|1816, 9G1Z|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_067 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.0893

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9G1Z|1|1|G|1619
9G1Z|1|1|G|1620
*
9G1Z|1|1|U|1815
9G1Z|1|1|U|1816
9G1Z|1|1|U|1817
9G1Z|1|1|C|1818

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL34

Chain AL

Ribosomal 60S subunit protein L38

Chain p

60S ribosomal protein L8