IL_9G1Z_074

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_074 not in the Motif Atlas

Homologous match to IL_8CRE_077

Geometric discrepancy: 0.0653

The information below is about IL_8CRE_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23038.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9G1Z|1|1|U|1698
9G1Z|1|1|U|1699
9G1Z|1|1|A|1700
9G1Z|1|1|U|1701
9G1Z|1|1|C|1702
9G1Z|1|1|A|1703
*
9G1Z|1|1|U|1733
9G1Z|1|1|C|1734
9G1Z|1|1|U|1735
9G1Z|1|1|U|1736
9G1Z|1|1|A|1737
9G1Z|1|1|U|1738
9G1Z|1|1|G|1739

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL34

Chain AQ

Ribosomal 60S subunit protein L43A