IL_9G1Z_105

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_105 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.1666

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9G1Z|1|1|G|2800
9G1Z|1|1|U|2801
9G1Z|1|1|G|2802
*
9G1Z|1|1|U|2830
9G1Z|1|1|U|2831
9G1Z|1|1|U|2832
9G1Z|1|1|U|2833
9G1Z|1|1|U|2834

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain r

Ribosomal 60S subunit protein L10