IL_9G1Z_106

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(OMC)AAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_106 not in the Motif Atlas

Homologous match to IL_8CRE_114

Geometric discrepancy: 0.0795

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9G1Z|1|1|U|2807
9G1Z|1|1|OMC|2808
9G1Z|1|1|A|2809
9G1Z|1|1|A|2810
9G1Z|1|1|G|2811
*
9G1Z|1|1|C|2821
9G1Z|1|1|G|2822
9G1Z|1|1|A|2823
9G1Z|1|1|C|2824
9G1Z|1|1|A|2825

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

Rpl40bp

Chain r

Ribosomal 60S subunit protein L10