IL_9G1Z_110

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_110 not in the Motif Atlas

Geometric match to IL_8CRE_118

Geometric discrepancy: 0.0611

The information below is about IL_8CRE_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9G1Z|1|1|C|2861
9G1Z|1|1|A|2862
9G1Z|1|1|U|2863
*
9G1Z|1|1|G|2884
9G1Z|1|1|C|2885
9G1Z|1|1|G|2886

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain k

60S ribosomal protein L3

Chain w

Ribosomal 60S subunit protein L16A