IL_9G1Z_148

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9G1Z|1|A|U|45, 9G1Z|1|A|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_148 not in the Motif Atlas

Geometric match to IL_8CRE_393

Geometric discrepancy: 0.0569

The information below is about IL_8CRE_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.2

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9G1Z|1|A|G|42
9G1Z|1|A|A|43
9G1Z|1|A|U|44
9G1Z|1|A|U|45
9G1Z|1|A|A|46
9G1Z|1|A|A|47
9G1Z|1|A|G|48
*
9G1Z|1|A|C|429
9G1Z|1|A|G|430
9G1Z|1|A|C|431

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

Ribosomal 40S subunit protein S23B