IL_9G1Z_157

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_157 not in the Motif Atlas

Homologous match to IL_8CRE_402

Geometric discrepancy: 0.0578

The information below is about IL_8CRE_402

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9G1Z|1|A|C|184
9G1Z|1|A|G|185
9G1Z|1|A|A|186
9G1Z|1|A|C|187
*
9G1Z|1|A|G|194
9G1Z|1|A|A|195
9G1Z|1|A|A|196
9G1Z|1|A|G|197

Current chains

Chain A

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S8