IL_9G1Z_174

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9G1Z|1|A|U|556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_174 not in the Motif Atlas

Homologous match to IL_8CRE_422

Geometric discrepancy: 0.0951

The information below is about IL_8CRE_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9G1Z|1|A|G|555
9G1Z|1|A|U|556
9G1Z|1|A|C|557
*
9G1Z|1|A|G|584
9G1Z|1|A|C|585

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

Ribosomal 40S subunit protein S3

Chain f

40S ribosomal protein S30