IL_9G1Z_176

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9G1Z|1|A|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_176 not in the Motif Atlas

Homologous match to IL_8CRE_424

Geometric discrepancy: 0.075

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9G1Z|1|A|G|614
9G1Z|1|A|U|615
9G1Z|1|A|U|616
9G1Z|1|A|A|617
9G1Z|1|A|A|618
9G1Z|1|A|A|619
9G1Z|1|A|A|620
*
9G1Z|1|A|U|1089
9G1Z|1|A|C|1090

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

Ribosomal 40S subunit protein S23B

Chain b

40S ribosomal protein S26