IL_9G1Z_186

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_186 not in the Motif Atlas

Geometric match to IL_7QUA_003

Geometric discrepancy: 0.1341

The information below is about IL_7QUA_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9G1Z|1|A|G|856
9G1Z|1|A|G|857
9G1Z|1|A|U|858
*
9G1Z|1|A|G|939
9G1Z|1|A|A|940
9G1Z|1|A|C|941

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain O

Ribosomal 40S subunit protein S13

Chain c

40S ribosomal protein S27