IL_9G1Z_208

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_208 not in the Motif Atlas

Homologous match to IL_8CRE_456

Geometric discrepancy: 0.0714

The information below is about IL_8CRE_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9G1Z|1|A|U|1275
9G1Z|1|A|G|1276
9G1Z|1|A|G|1277
*
9G1Z|1|A|C|1308
9G1Z|1|A|G|1309
9G1Z|1|A|A|1310

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0

Chain D

Ribosomal 40S subunit protein S2

Chain S

Ribosomal 40S subunit protein S17B