IL_9G1Z_217

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_217 not in the Motif Atlas

Homologous match to IL_8CRE_465

Geometric discrepancy: 0.0794

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9G1Z|1|A|G|1527
9G1Z|1|A|G|1528
9G1Z|1|A|G|1529
9G1Z|1|A|A|1530
9G1Z|1|A|U|1531
9G1Z|1|A|A|1532
*
9G1Z|1|A|U|1553
9G1Z|1|A|U|1554
9G1Z|1|A|C|1555
9G1Z|1|A|A|1556
9G1Z|1|A|A|1557
9G1Z|1|A|C|1558

Current chains

Chain A

18S rRNA

Nearby chains

Chain T

Ribosomal 40S subunit protein S18B

Chain U

Ribosomal 40S subunit protein S19A