IL_9G1Z_219

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G1Z_219 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0715

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9G1Z|1|A|G|1625
9G1Z|1|A|C|1626
9G1Z|1|A|C|1627
9G1Z|1|A|C|1628
*
9G1Z|1|A|G|1747
9G1Z|1|A|U|1748
9G1Z|1|A|A|1749
9G1Z|1|A|A|1750
9G1Z|1|A|C|1751

Current chains

Chain A

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AO

60S ribosomal protein L41