IL_9G4I_001

3D structure

PDB id

9G4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1 and 2 "Partly open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

CAUAUGAGG*UAAAUG

Length

15 nucleotides

Bulged bases

9G4I|1|A|U|152, 9G4I|1|A|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G4I|1|A|C|148
9G4I|1|A|A|149
9G4I|1|A|U|150
9G4I|1|A|A|151
9G4I|1|A|U|152
9G4I|1|A|G|153
9G4I|1|A|A|154
9G4I|1|A|G|155
9G4I|1|A|G|156
*
9G4I|1|A|U|221
9G4I|1|A|A|222
9G4I|1|A|A|223
9G4I|1|A|A|224
9G4I|1|A|U|225
9G4I|1|A|G|226

Current chains

Chain A

GROUP IIC INTRON

Nearby chains