IL_9G4V_001

3D structure

PDB id

9G4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1 and 2 "Fully open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

4.69 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

9G4V|1|A|U|152, 9G4V|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G4V|1|A|A|149
9G4V|1|A|U|150
9G4V|1|A|A|151
9G4V|1|A|U|152
9G4V|1|A|G|153
9G4V|1|A|A|154
9G4V|1|A|G|155
9G4V|1|A|G|156
*
9G4V|1|A|U|221
9G4V|1|A|A|222
9G4V|1|A|A|223
9G4V|1|A|A|224
9G4V|1|A|U|225

Current chains

Chain A

GROUP IIC INTRON

Nearby chains