IL_9G54_003

3D structure

PDB id

9G54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Partly open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

9G54|1|A|A|105, 9G54|1|A|A|106, 9G54|1|A|G|107

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G54|1|A|C|76
9G54|1|A|A|77
9G54|1|A|A|78
9G54|1|A|G|79
*
9G54|1|A|U|103
9G54|1|A|G|104
9G54|1|A|A|105
9G54|1|A|A|106
9G54|1|A|G|107
9G54|1|A|G|108
9G54|1|A|A|109
9G54|1|A|A|110
9G54|1|A|G|111

Current chains

Chain A

GROUP IIC INTRON

Nearby chains