IL_9G54_008

3D structure

PDB id

9G54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Partly open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AUG*CUUUCUGCCAAAGUU

Length

18 nucleotides

Bulged bases

9G54|1|A|A|207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G54|1|A|A|167
9G54|1|A|U|168
9G54|1|A|G|169
*
9G54|1|A|C|197
9G54|1|A|U|198
9G54|1|A|U|199
9G54|1|A|U|200
9G54|1|A|C|201
9G54|1|A|U|202
9G54|1|A|G|203
9G54|1|A|C|204
9G54|1|A|C|205
9G54|1|A|A|206
9G54|1|A|A|207
9G54|1|A|A|208
9G54|1|A|G|209
9G54|1|A|U|210
9G54|1|A|U|211

Current chains

Chain A

GROUP IIC INTRON

Nearby chains