IL_9G5C_035

3D structure

PDB id

9G5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCACCC*GACAAGUC

Length

15 nucleotides

Bulged bases

9G5C|1|A|A|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G5C|1|A|G|1489
9G5C|1|A|U|1490
9G5C|1|A|C|1491
9G5C|1|A|A|1492
9G5C|1|A|C|1493
9G5C|1|A|C|1494
9G5C|1|A|C|1495
*
9G5C|1|A|G|1554
9G5C|1|A|A|1555
9G5C|1|A|C|1556
9G5C|1|A|A|1557
9G5C|1|A|A|1558
9G5C|1|A|G|1559
9G5C|1|A|U|1560
9G5C|1|A|C|1561

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain J

28S ribosomal protein S12, mitochondrial

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase