IL_9G5D_016
3D structure
- PDB id
- 9G5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome small subunit (State C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 9G5D|1|A|C|904, 9G5D|1|A|C|906, 9G5D|1|A|A|907
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G5D_016 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.2443
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G5D|1|A|G|887
9G5D|1|A|U|888
9G5D|1|A|G|889
9G5D|1|A|C|890
9G5D|1|A|C|891
9G5D|1|A|A|892
9G5D|1|A|G|893
*
9G5D|1|A|C|900
9G5D|1|A|G|901
9G5D|1|A|G|902
9G5D|1|A|U|903
9G5D|1|A|C|904
9G5D|1|A|A|905
9G5D|1|A|C|906
9G5D|1|A|A|907
9G5D|1|A|C|908
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain a
- Putative ribosome-binding factor A, mitochondrial
Coloring options: